Index

A | B | C | D | E | F | G | I | K | L | M | N | P | Q | R | S | T | U | V | W

A

AAComposition (module)

AAIndex (module)

aakeys (AAIndex.Record attribute)

(PyProteinAAIndex.Record attribute)

AALetter (PyProtein.PyProtein attribute)

addhs() (PyPretreatMol.StandardizeMol method)

ALPHABET (in module PyDNAutil)

(in module PyPretreatDNA)

AssignAtomType() (in module cats2d)

AtomProperty (module)

AtomTypes (module)

Autocorrelation (module)

B

basak (module)

bcut (module)
BuildPatts() (in module AtomTypes)

C

calcPubChemFingerAll() (in module PubChemFingerprints)

calcPubChemFingerPart1() (in module PubChemFingerprints)

calcPubChemFingerPart2() (in module PubChemFingerprints)

CalculateAAComposition() (in module AAComposition)

(in module PyProteinAAComposition)

CalculateAADipeptideComposition() (in module AAComposition)

(in module PyProteinAAComposition)

CalculateAllAtomNumber() (in module constitution)

CalculateAllMaxNCharge() (in module charge)

CalculateAllMaxPCharge() (in module charge)

CalculateAllSumSquareCharge() (in module charge)

CalculateArithmeticTopoIndex() (in module topology)

CalculateAromaticBondNumber() (in module constitution)

CalculateAtomPairsFingerprint() (in module fingerprint)

CalculateAutoTotal() (in module Autocorrelation)

CalculateAverageMolWeight() (in module constitution)

CalculateBalaban() (in module topology)

CalculateBasakCIC0() (in module basak)

CalculateBasakCIC1() (in module basak)

CalculateBasakCIC2() (in module basak)

CalculateBasakCIC3() (in module basak)

CalculateBasakCIC4() (in module basak)

CalculateBasakCIC5() (in module basak)

CalculateBasakCIC6() (in module basak)

CalculateBasakIC0() (in module basak)

CalculateBasakIC1() (in module basak)

CalculateBasakIC2() (in module basak)

CalculateBasakIC3() (in module basak)

CalculateBasakIC4() (in module basak)

CalculateBasakIC5() (in module basak)

CalculateBasakIC6() (in module basak)

CalculateBasakSIC0() (in module basak)

CalculateBasakSIC1() (in module basak)

CalculateBasakSIC2() (in module basak)

CalculateBasakSIC3() (in module basak)

CalculateBasakSIC4() (in module basak)

CalculateBasakSIC5() (in module basak)

CalculateBasakSIC6() (in module basak)

CalculateBertzCT() (in module topology)

CalculateBromineNumber() (in module constitution)

CalculateBurdenElectronegativity() (in module bcut)

CalculateBurdenMass() (in module bcut)

CalculateBurdenPolarizability() (in module bcut)

CalculateBurdenVDW() (in module bcut)

CalculateC() (in module CTD)

CalculateCarbonNumber() (in module constitution)

CalculateChi0() (in module connectivity)

CalculateChi1() (in module connectivity)

CalculateChi10p() (in module connectivity)

CalculateChi2() (in module connectivity)

CalculateChi3c() (in module connectivity)

CalculateChi3ch() (in module connectivity)

CalculateChi3p() (in module connectivity)

CalculateChi4c() (in module connectivity)

CalculateChi4ch() (in module connectivity)

CalculateChi4p() (in module connectivity)

CalculateChi4pc() (in module connectivity)

CalculateChi5ch() (in module connectivity)

CalculateChi5p() (in module connectivity)

CalculateChi6ch() (in module connectivity)

CalculateChi6p() (in module connectivity)

CalculateChi7p() (in module connectivity)

CalculateChi8p() (in module connectivity)

CalculateChi9p() (in module connectivity)

CalculateChiv0() (in module connectivity)

CalculateChiv1() (in module connectivity)

CalculateChiv10p() (in module connectivity)

CalculateChiv2() (in module connectivity)

CalculateChiv3c() (in module connectivity)

CalculateChiv3ch() (in module connectivity)

CalculateChiv3p() (in module connectivity)

CalculateChiv4c() (in module connectivity)

CalculateChiv4ch() (in module connectivity)

CalculateChiv4p() (in module connectivity)

CalculateChiv4pc() (in module connectivity)

CalculateChiv5ch() (in module connectivity)

CalculateChiv5p() (in module connectivity)

CalculateChiv6ch() (in module connectivity)

CalculateChiv6p() (in module connectivity)

CalculateChiv7p() (in module connectivity)

CalculateChiv8p() (in module connectivity)

CalculateChiv9p() (in module connectivity)

CalculateChlorinNumber() (in module constitution)

CalculateCMaxNCharge() (in module charge)

CalculateCMaxPCharge() (in module charge)

CalculateComposition() (in module CTD)

CalculateCompositionCharge() (in module CTD)

CalculateCompositionHydrophobicity() (in module CTD)

CalculateCompositionNormalizedVDWV() (in module CTD)

CalculateCompositionPolarity() (in module CTD)

CalculateCompositionPolarizability() (in module CTD)

CalculateCompositionSecondaryStr() (in module CTD)

CalculateCompositionSolventAccessibility() (in module CTD)

CalculateConjointTriad() (in module ConjointTriad)

CalculateCSumSquareCharge() (in module charge)

CalculateCTD() (in module CTD)

CalculateD() (in module CTD)

CalculateDaylightFingerprint() (in module fingerprint)

CalculateDeltaChi0() (in module connectivity)

CalculateDeltaChi1() (in module connectivity)

CalculateDeltaChi2() (in module connectivity)

CalculateDeltaChi3() (in module connectivity)

CalculateDeltaChi3c4pc() (in module connectivity)

CalculateDeltaChi4() (in module connectivity)

CalculateDeltaChiv3c4pc() (in module connectivity)

CalculateDiameter() (in module topology)

CalculateDipeptideComposition() (in module AAComposition)

(in module PyProteinAAComposition)

CalculateDistribution() (in module CTD)

CalculateDistributionCharge() (in module CTD)

CalculateDistributionHydrophobicity() (in module CTD)

CalculateDistributionNormalizedVDWV() (in module CTD)

CalculateDistributionPolarity() (in module CTD)

CalculateDistributionPolarizability() (in module CTD)

CalculateDistributionSecondaryStr() (in module CTD)

CalculateDistributionSolventAccessibility() (in module CTD)

CalculateDoubleBondNumber() (in module constitution)

CalculateEachGearyAuto() (in module Autocorrelation)

CalculateEachMoranAuto() (in module Autocorrelation)

CalculateEachNormalizedMoreauBrotoAuto() (in module Autocorrelation)

CalculateECFP2Fingerprint() (in module fingerprint)

CalculateECFP4Fingerprint() (in module fingerprint)

CalculateECFP6Fingerprint() (in module fingerprint)

CalculateEstateFingerprint() (in module estate)

(in module fingerprint)

CalculateEstateValue() (in module estate)

CalculateEstateVSA() (in module moe)

CalculateFCFP2Fingerprint() (in module fingerprint)

CalculateFCFP4Fingerprint() (in module fingerprint)

CalculateFCFP6Fingerprint() (in module fingerprint)

CalculateFlexibility() (in module kappa)

CalculateFluorinNumber() (in module constitution)

CalculateFP2Fingerprint() (in module fingerprint)

CalculateFP3Fingerprint() (in module fingerprint)

CalculateFP4Fingerprint() (in module fingerprint)

CalculateGearyAuto() (in module Autocorrelation)

CalculateGearyAutoAvFlexibility() (in module Autocorrelation)

CalculateGearyAutoElectronegativity() (in module geary)

CalculateGearyAutoFreeEnergy() (in module Autocorrelation)

CalculateGearyAutoHydrophobicity() (in module Autocorrelation)

CalculateGearyAutoMass() (in module geary)

CalculateGearyAutoMutability() (in module Autocorrelation)

CalculateGearyAutoPolarizability() (in module Autocorrelation)

(in module geary)

CalculateGearyAutoResidueASA() (in module Autocorrelation)

CalculateGearyAutoResidueVol() (in module Autocorrelation)

CalculateGearyAutoSteric() (in module Autocorrelation)

CalculateGearyAutoTotal() (in module Autocorrelation)

CalculateGearyAutoVolume() (in module geary)

CalculateGeometricTopoIndex() (in module topology)

CalculateGhoseCrippenFingerprint() (in module fingerprint)

CalculateGraphDistance() (in module topology)

CalculateGutmanTopo() (in module topology)

CalculateHacceptorNumber() (in module constitution)

CalculateHalogenNumber() (in module constitution)

CalculateHarary() (in module topology)

CalculateHarmonicTopoIndex() (in module topology)

CalculateHdonorNumber() (in module constitution)

CalculateHeavyAtomNumber() (in module constitution)

CalculateHeteroNumber() (in module constitution)

CalculateHMaxNCharge() (in module charge)

CalculateHMaxPCharge() (in module charge)

CalculateHSumSquareCharge() (in module charge)

CalculateHydrogenNumber() (in module constitution)

CalculateHydrophilicityFactor() (in module molproperty)

CalculateInteraction1() (in module PyInteraction)

CalculateInteraction2() (in module PyInteraction)

CalculateInteraction3() (in module PyInteraction)

CalculateIodineNumber() (in module constitution)

CalculateIpc() (in module topology)

CalculateKappa1() (in module kappa)

CalculateKappa2() (in module kappa)

CalculateKappa3() (in module kappa)

CalculateKappaAlapha1() (in module kappa)

CalculateKappaAlapha2() (in module kappa)

CalculateKappaAlapha3() (in module kappa)

CalculateLabuteASA() (in module moe)

CalculateLocalDipoleIndex() (in module charge)

CalculateMACCSFingerprint() (in module fingerprint)

CalculateMaxAtomTypeEState() (in module estate)

CalculateMeanAbsoulteCharge() (in module charge)

CalculateMeanNCharge() (in module charge)

CalculateMeanPCharge() (in module charge)

CalculateMeanRandic() (in module connectivity)

CalculateMeanWeiner() (in module topology)

CalculateMinAtomTypeEState() (in module estate)

CalculateMolLogP() (in module molproperty)

CalculateMolLogP2() (in module molproperty)

CalculateMolMR() (in module molproperty)

CalculateMolWeight() (in module constitution)

CalculateMoranAuto() (in module Autocorrelation)

CalculateMoranAutoAvFlexibility() (in module Autocorrelation)

CalculateMoranAutoElectronegativity() (in module moran)

CalculateMoranAutoFreeEnergy() (in module Autocorrelation)

CalculateMoranAutoHydrophobicity() (in module Autocorrelation)

CalculateMoranAutoMass() (in module moran)

CalculateMoranAutoMutability() (in module Autocorrelation)

CalculateMoranAutoPolarizability() (in module Autocorrelation)

(in module moran)

CalculateMoranAutoResidueASA() (in module Autocorrelation)

CalculateMoranAutoResidueVol() (in module Autocorrelation)

CalculateMoranAutoSteric() (in module Autocorrelation)

CalculateMoranAutoTotal() (in module Autocorrelation)

CalculateMoranAutoVolume() (in module moran)

CalculateMoreauBrotoAutoElectronegativity() (in module moreaubroto)

CalculateMoreauBrotoAutoMass() (in module moreaubroto)

CalculateMoreauBrotoAutoPolarizability() (in module moreaubroto)

CalculateMoreauBrotoAutoVolume() (in module moreaubroto)

CalculateMorganFingerprint() (in module fingerprint)

CalculateMZagreb1() (in module topology)

CalculateMZagreb2() (in module topology)

CalculateNitrogenNumber() (in module constitution)

CalculateNMaxNCharge() (in module charge)

CalculateNMaxPCharge() (in module charge)

CalculateNormalizedMoreauBrotoAuto() (in module Autocorrelation)

CalculateNormalizedMoreauBrotoAutoAvFlexibility() (in module Autocorrelation)

CalculateNormalizedMoreauBrotoAutoFreeEnergy() (in module Autocorrelation)

CalculateNormalizedMoreauBrotoAutoHydrophobicity() (in module Autocorrelation)

CalculateNormalizedMoreauBrotoAutoMutability() (in module Autocorrelation)

CalculateNormalizedMoreauBrotoAutoPolarizability() (in module Autocorrelation)

CalculateNormalizedMoreauBrotoAutoResidueASA() (in module Autocorrelation)

CalculateNormalizedMoreauBrotoAutoResidueVol() (in module Autocorrelation)

CalculateNormalizedMoreauBrotoAutoSteric() (in module Autocorrelation)

CalculateNormalizedMoreauBrotoAutoTotal() (in module Autocorrelation)

CalculateNSumSquareCharge() (in module charge)

CalculateOMaxNCharge() (in module charge)

CalculateOMaxPCharge() (in module charge)

CalculateOSumSquareCharge() (in module charge)

CalculateOxygenNumber() (in module constitution)

CalculatePath1() (in module constitution)

CalculatePath2() (in module constitution)

CalculatePath3() (in module constitution)

CalculatePath4() (in module constitution)

CalculatePath5() (in module constitution)

CalculatePath6() (in module constitution)

CalculatePEOEVSA() (in module moe)

CalculatePetitjean() (in module topology)

CalculatePharm2D2pointFingerprint() (in module fingerprint)

CalculatePharm2D3pointFingerprint() (in module fingerprint)

CalculatePhosphorNumber() (in module constitution)

CalculatePlatt() (in module topology)

CalculatePoglianiIndex() (in module topology)

CalculatePolarityNumber() (in module topology)

CalculatePubChemFingerprint() (in module fingerprint)

CalculateQuadratic() (in module topology)

CalculateRadius() (in module topology)

CalculateRelativeNCharge() (in module charge)

CalculateRelativePCharge() (in module charge)

CalculateRingNumber() (in module constitution)

CalculateRotationBondNumber() (in module constitution)

CalculateSchiultz() (in module topology)

CalculateSimilarityPybel() (in module fingerprint)

CalculateSimilarityRdkit() (in module fingerprint)

CalculateSimpleTopoIndex() (in module topology)

CalculateSingleBondNumber() (in module constitution)

CalculateSLOGPVSA() (in module moe)

CalculateSMRVSA() (in module moe)

CalculateSubmolPolarityPara() (in module charge)

CalculateSulfurNumber() (in module constitution)

CalculateT() (in module CTD)

CalculateTopologicalTorsionFingerprint() (in module fingerprint)

CalculateTotalAbsoulteCharge() (in module charge)

CalculateTotalNCharge() (in module charge)

CalculateTotalPCharge() (in module charge)

CalculateTPSA() (in module moe)

(in module molproperty)

CalculateTransition() (in module CTD)

CalculateTransitionCharge() (in module CTD)

CalculateTransitionHydrophobicity() (in module CTD)

CalculateTransitionNormalizedVDWV() (in module CTD)

CalculateTransitionPolarity() (in module CTD)

CalculateTransitionPolarizability() (in module CTD)

CalculateTransitionSecondaryStr() (in module CTD)

CalculateTransitionSolventAccessibility() (in module CTD)

CalculateTripleBondNumber() (in module constitution)

CalculateUnsaturationIndex() (in module molproperty)

CalculateVSAEstate() (in module moe)

CalculateWeiner() (in module topology)

CalculateXlogP() (in module molproperty)

CalculateXlogP2() (in module molproperty)

CalculateXuIndex() (in module topology)

CalculateZagreb1() (in module topology)

CalculateZagreb2() (in module topology)

canonicalize_tautomer (PyPretreatMol.StandardizeMol attribute)

cats2d (module)

CATS2D() (in module cats2d)

charge (module)

CheckAcc() (in module PyDNAac)

CheckNacPara() (in module PyDNAnac)

CheckPsenac() (in module PyDNApsenac)

cmp() (in module PyDNAnacutil)

ComputeBinNum() (in module PyDNAnacutil)

ComputeQuantileBoundaries() (in module PyDNAnacutil)

ConjointTriad (module)

connectivity (module)

constitution (module)

ContructLFromGraphSearch() (in module cats2d)

ConvertPhycheIndexToDict() (in module PyDNAutil)

(in module PyPretreatDNA)

CTD (module)

D

DictToCSV() (in module PyPreTools)
disconnect_metals (PyPretreatMol.StandardizeMol attribute)

Diversity() (in module PyDNAnacutil)

DNAChecks() (in module PyDNAutil)

(in module PyPretreatDNA)

E

estate (module)

extend() (AAIndex.MatrixRecord method)

(AAIndex.Record method)
(PyProteinAAIndex.MatrixRecord method)
(PyProteinAAIndex.Record method)

ExtendPhycheIndex() (in module PyDNAacutil)

(in module PyDNApsenacutil)

F

FindRevcomp() (in module PyDNAnacutil)

fingerprint (module)

FormCATSDict() (in module cats2d)

FormCATSLabel() (in module cats2d)

Frequency() (in module PyDNAnacutil)

(in module PyDNAutil)
(in module PyPretreatDNA)

func_1() (in module PubChemFingerprints)
func_2() (in module PubChemFingerprints)
func_3() (in module PubChemFingerprints)
func_4() (in module PubChemFingerprints)
func_5() (in module PubChemFingerprints)
func_6() (in module PubChemFingerprints)
func_7() (in module PubChemFingerprints)
func_8() (in module PubChemFingerprints)

G

geary (module)

GeneratePhycheValue() (in module PyDNAutil)

(in module PyPretreatDNA)

get() (AAIndex.MatrixRecord method)

(AAIndex.Record method)
(PyProteinAAIndex.MatrixRecord method)
(PyProteinAAIndex.Record method)
(in module AAIndex)
(in module PyProteinAAIndex)

GetAAComp() (PyProtein.PyProtein method)

GetAAComposition() (in module PseudoAAC)

(in module QuasiSequenceOrder)

GetAAIndex1() (in module AAIndex)

(in module PyProteinAAIndex)

GetAAindex1() (PyProtein.PyProtein method)

GetAAIndex23() (in module AAIndex)

(in module PyProteinAAIndex)

GetAAindex23() (PyProtein.PyProtein method)

GetAbsoluteAtomicProperty() (in module AtomProperty)

GetALL() (PyProtein.PyProtein method)

GetAPAAC() (PyProtein.PyProtein method)

GetAPseudoAAC() (in module PseudoAAC)

GetAPseudoAAC1() (in module PseudoAAC)

GetAPseudoAAC2() (in module PseudoAAC)

GetAtomLabel() (in module AtomTypes)

Getbasak() (in module basak)

GetBurden() (in module bcut)

GetCharge() (in module charge)

GetConnectivity() (in module connectivity)

GetConstitutional() (in module constitution)

GetCorrelationFunction() (in module PseudoAAC)

GetCTD() (PyProtein.PyProtein method)

GetDAC() (in module PyDNAac)

GetDACC() (in module PyDNAac)

GetData() (in module PyDNAutil)

(in module PyPretreatDNA)

GetDCC() (in module PyDNAac)

GetDNA (module)

GetDNAFromUniGene() (in module GetDNA)

GetDPComp() (PyProtein.PyProtein method)

GetEstate() (in module estate)

GetGearyAuto() (in module geary)

(PyProtein.PyProtein method)

GetGearyAutop() (PyProtein.PyProtein method)

GetIdKmer() (in module PyDNAnac)

GetKappa() (in module kappa)

GetKmer() (in module PyDNAnac)

GetKmerList() (in module PyDNAnac)

Getkmers() (in module AAComposition)

(in module PyProteinAAComposition)

GetMOE() (in module moe)

Getmol (module)

GetMolecularProperty() (in module molproperty)

GetMolFromCAS() (in module Getmol)

GetMolFromDrugbank() (in module Getmol)

GetMolFromEBI() (in module Getmol)

GetMolFromKegg() (in module Getmol)

GetMolFromNCBI() (in module Getmol)

GetMoranAuto() (in module moran)

(PyProtein.PyProtein method)

GetMoranAutop() (PyProtein.PyProtein method)

GetMoreauBrotoAuto() (in module moreaubroto)

(PyProtein.PyProtein method)

GetMoreauBrotoAutop() (PyProtein.PyProtein method)

GetPAAC() (PyProtein.PyProtein method)

GetPAACp() (PyProtein.PyProtein method)

GetParallelFactor() (in module PyDNApsenacutil)

GetParallelFactorPsednc() (in module PyDNApsenacutil)

GetPCPseDNC() (in module PyDNApsenac)

GetPCPseTNC() (in module PyDNApsenac)

GetPDB() (in module GetProtein)

GetPhycheFactorDic() (in module PyDNApsenacutil)

GetPhycheIndex() (in module PyDNApsenacutil)

GetProtein (module)

GetProteinFromUniprot (module)

GetProteinSequence() (in module GetProtein)

(in module GetProteinFromUniprot)

GetProteinSequenceFromTxt() (in module GetProtein)

(in module GetProteinFromUniprot)

GetPseDNC() (in module PyDNApsenac)

GetPseKNC() (in module PyDNApsenac)

GetPseudoAAC() (in module PseudoAAC)

GetPseudoAAC1() (in module PseudoAAC)

GetPseudoAAC2() (in module PseudoAAC)

GetQSO() (PyProtein.PyProtein method)

GetQSOp() (PyProtein.PyProtein method)

GetQuasiSequenceOrder() (in module QuasiSequenceOrder)

GetQuasiSequenceOrder1() (in module QuasiSequenceOrder)

GetQuasiSequenceOrder1Grant() (in module QuasiSequenceOrder)

GetQuasiSequenceOrder1SW() (in module QuasiSequenceOrder)

GetQuasiSequenceOrder2() (in module QuasiSequenceOrder)

GetQuasiSequenceOrder2Grant() (in module QuasiSequenceOrder)

GetQuasiSequenceOrder2SW() (in module QuasiSequenceOrder)

GetQuasiSequenceOrderp() (in module QuasiSequenceOrder)

GetRelativeAtomicProperty() (in module AtomProperty)

GetRevcKmer() (in module PyDNAnac)

GetScaffold() (in module Scaffolds)

GetSCPseDNC() (in module PyDNApsenac)

GetSCPseTNC() (in module PyDNApsenac)

GetSeqFromPDB() (in module GetProtein)

GetSequenceCheckDna() (in module PyDNAutil)

(in module PyPretreatDNA)

GetSequenceListAndPhycheValue() (in module PyDNApsenac)

GetSequenceListAndPhycheValuePsednc() (in module PyDNApsenac)

GetSequenceListAndPhycheValuePseknc() (in module PyDNApsenac)

GetSequenceOrderCorrelationFactor() (in module PseudoAAC)

GetSequenceOrderCorrelationFactorForAPAAC() (in module PseudoAAC)

GetSequenceOrderCouplingNumber() (in module QuasiSequenceOrder)

GetSequenceOrderCouplingNumberGrant() (in module QuasiSequenceOrder)

GetSequenceOrderCouplingNumberp() (in module QuasiSequenceOrder)

GetSequenceOrderCouplingNumberSW() (in module QuasiSequenceOrder)

GetSequenceOrderCouplingNumberTotal() (in module QuasiSequenceOrder)

GetSeriesFactor() (in module PyDNApsenacutil)

GetSOCN() (PyProtein.PyProtein method)

GetSOCNp() (PyProtein.PyProtein method)

GetSpectrumDict() (in module AAComposition)

(in module PyProteinAAComposition)

GetSubSeq (module)

GetSubSeq() (PyProtein.PyProtein method)

GetSubSequence() (in module GetSubSeq)

GetTAC() (in module PyDNAac)

GetTACC() (in module PyDNAac)

GetTCC() (in module PyDNAac)

GetTopology() (in module topology)

GetTPComp() (PyProtein.PyProtein method)

GetTriad() (PyProtein.PyProtein method)

GetUniqueScaffold() (in module Scaffolds)

ghosecrippen (module)

GhoseCrippenFingerprint() (in module ghosecrippen)

grep() (in module AAIndex)

(in module PyProteinAAIndex)

I

IdXS() (in module PyDNAnacutil)

init() (in module AAIndex)

(in module PyProteinAAIndex)

init_from_file() (in module AAIndex)

(in module PyProteinAAIndex)

InitKeys() (in module PubChemFingerprints)

IsFasta() (in module GetDNA)

(in module GetProtein)
(in module PyDNAutil)
(in module PyPretreatDNA)

IsSequenceList() (in module PyDNAutil)

(in module PyPretreatDNA)

IsUnderAlphabet() (in module GetDNA)

(in module PyDNAutil)
(in module PyPretreatDNA)

K

kappa (module)

L

largest_fragment (PyPretreatMol.StandardizeMol attribute)

ListToCSV() (in module PyPreTools)

M

MakeACVector() (in module PyDNAacutil)
MakeCCVector() (in module PyDNAacutil)
MakeIndex() (in module PyDNAnacutil)
MakeIndexUptoK() (in module PyDNAnacutil)
MakeIndexUptoKRevcomp() (in module PyDNAnacutil)
MakeKmerList() (in module PyDNAnacutil)
MakeKmerVector() (in module PyDNAnacutil)
MakeOldPsekncVector() (in module PyDNApsenacutil)
MakePsekncVector() (in module PyDNApsenacutil)
MakeRevcompKmerList() (in module PyDNAnacutil)
MakeSequenceVector() (in module PyDNAnacutil)

MakeUptoKmerList() (in module PyDNAnacutil)

MatchAtomType() (in module cats2d)

MatrixRecord (class in AAIndex)

(class in PyProteinAAIndex)

median() (AAIndex.MatrixRecord method)

(AAIndex.Record method)
(PyProteinAAIndex.MatrixRecord method)
(PyProteinAAIndex.Record method)

moe (module)

molproperty (module)

moran (module)

moreaubroto (module)

N

normalize (PyPretreatMol.StandardizeMol attribute)

NormalizeEachAAP() (in module Autocorrelation)

(in module PseudoAAC)

NormalizeIndex() (in module PyDNAutil)

(in module PyPretreatDNA)

NormalizeVector() (in module PyDNAnacutil)

P

ParallelCorFunction() (in module PyDNApsenacutil)

pdbDownload() (in module GetProtein)

pdbSeq() (in module GetProtein)

ProCheck (module)

ProteinCheck() (in module ProCheck)

(in module PyPretreatPro)

PseudoAAC (module)

PubChemFingerprints (module)

PyDNAac (module)

PyDNAacutil (module)

PyDNAnac (module)

PyDNAnacutil (module)

PyDNApsenac (module)

PyDNApsenacutil (module)

PyDNAutil (module)

PyInteraction (module)

PyPreTools (module)

PyPretreatDNA (module)

PyPretreatMol (module)

PyPretreatMolutil (module)

PyPretreatPro (module)

PyProtein (class in PyProtein)

(module)

PyProteinAAComposition (module)

PyProteinAAIndex (module)

Q

QuasiSequenceOrder (module)

R

ReadFasta() (in module GetDNA)

(in module GetProtein)
(in module PyDNAutil)
(in module PyPretreatDNA)

ReadFastaCheckDna() (in module PyDNAutil)

(in module PyPretreatDNA)

ReadFastaSequence() (in module PyDNAnacutil)

ReadFastaYield() (in module PyDNAutil)

(in module PyPretreatDNA)

ReadMolFromInchi() (in module Getmol)

ReadMolFromMOL() (in module Getmol)

ReadMolFromMol() (in module Getmol)

ReadMolFromSDF() (in module Getmol)

ReadMolFromSmile() (in module Getmol)

ReadSequenceAndNumbers() (in module PyDNAnacutil)

ReadyAcc() (in module PyDNAac)

Record (class in AAIndex)

(class in PyProteinAAIndex)

reionize (PyPretreatMol.StandardizeMol attribute)

rmhs() (PyPretreatMol.StandardizeMol method)

S

Scaffolds (module)

search() (in module AAIndex)

(in module PyProteinAAIndex)

Seq (class in GetDNA)

(class in GetProtein)
(class in PyDNAutil)
(class in PyPretreatDNA)

SeriesCorFunction() (in module PyDNApsenacutil)

StandardDeviation() (in module PyDNAutil)

(in module PyPretreatDNA)

StandardizeMol (class in PyPretreatMol)

StandardMol() (in module PyPretreatMol)

StandardSmi() (in module PyPretreatMol)

StringtoNum() (in module CTD)

Substitute() (in module PyDNAnacutil)

T

test (module)
test_PyBioMed (module)
test_pybiomed() (in module test_PyBioMed)
test_PyDNA (module)
test_pydna() (in module test_PyDNA)
test_PyGetMol (module)
test_pygetmol() (in module test_PyGetMol)
test_PyInteration (module)
test_pyinteration() (in module test_PyInteration)
test_PyMolecule (module)

test_pymolecule() (in module test_PyMolecule)
test_PyPretreat (module)
test_pypretreat() (in module test_PyPretreat)
test_PyProtein (module)
test_pyprotein() (in module test_PyProtein)
timelimited() (in module GetProtein)
TimeoutException
topology (module)
TupleToCSV() (in module PyPreTools)
TypeAtoms() (in module AtomTypes)

U

uncharge (PyPretreatMol.StandardizeMol attribute)

unZip() (in module GetProtein)

V

ValidatorMol() (in module PyPretreatMol)

ValidatorSmi() (in module PyPretreatMol)
Version (PyProtein.PyProtein attribute)

W

WriteLibsvm() (in module PyDNAutil)

(in module PyPretreatDNA)