ConjointTriad module¶

protein sequence information. You can get 7*7*7=343 features.You can freely

use and distribute it. If you hava any problem, you could contact with us timely!

Reference:

Juwen Shen, Jian Zhang, Xiaomin Luo, Weiliang Zhu, Kunqian Yu, Kaixian Chen,

Yixue Li, Huanliang Jiang. Predicting proten-protein interactions based only

on sequences inforamtion. PNAS. 2007 (104) 4337-4341.

Authors: Zhijiang Yao and Dongsheng Cao.

Date: 2016.06.04

ConjointTriad.CalculateConjointTriad(proteinsequence)[source]¶

Calculate the conjoint triad features from protein sequence.

Useage:

res = CalculateConjointTriad(protein)

Input: protein is a pure protein sequence.

Output is a dict form containing all 343 conjoint triad features.