PyDNAac module¶
A class used for computing different types of DNA descriptors!
You can freely use and distribute it. If you have any problem,
you could contact with us timely.
Authors: Zhijiang Yao and Dongsheng Cao.
Date: 2016.07.11
Email: gadsby@163.com and oriental-cds@163.com
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PyDNAac.GetDAC(input_data, **kwargs)[source]¶ Make DAC dictionary.
Parameters: - input_data – file object or sequence list.
- phyche_index – physicochemical properties list.
- all_property – bool, choose all physicochemical properties or not.
- extra_phyche_index – dict, the key is the dinucleotide (string), and its corresponding value is a list. It means user-defined phyche_index.
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PyDNAac.GetDACC(input_data, **kwargs)[source]¶ Make DACC dictionary.
Parameters: - input_data – file object or sequence list.
- phyche_index – physicochemical properties list.
- all_property – bool, choose all physicochemical properties or not.
- extra_phyche_index – dict, the key is the dinucleotide (string), and its corresponding value is a list. It means user-defined phyche_index.
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PyDNAac.GetDCC(input_data, **kwargs)[source]¶ Make DCC vector.
Parameters: - input_data – file object or sequence list.
- phyche_index – physicochemical properties list.
- all_property – bool, choose all physicochemical properties or not.
- extra_phyche_index – dict, the key is the dinucleotide (string), and its corresponding value is a list. It means user-defined phyche_index.
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PyDNAac.GetTAC(input_data, **kwargs)[source]¶ Make TAC dictionary.
Parameters: - input_data – file object or sequence list.
- phyche_index – physicochemical properties list.
- all_property – bool, choose all physicochemical properties or not.
- extra_phyche_index – dict, the key is the dinucleotide (string), and its corresponding value is a list. It means user-defined phyche_index.
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PyDNAac.GetTACC(input_data, **kwargs)[source]¶ Make TACC dictionary.
Parameters: - input_data – file object or sequence list.
- phyche_index – physicochemical properties list.
- all_property – bool, choose all physicochemical properties or not.
- extra_phyche_index – dict, the key is the dinucleotide (string), and its corresponding value is a list. It means user-defined phyche_index.
-
PyDNAac.GetTCC(input_data, **kwargs)[source]¶ Make TCC dictionary.
Parameters: - input_data – file object or sequence list.
- phyche_index – physicochemical properties list.
- all_property – bool, choose all physicochemical properties or not.
- extra_phyche_index – dict, the key is the dinucleotide (string), and its corresponding value is a list. It means user-defined phyche_index.